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Introduction to DKRZ’s HLRE-3 system Mistral
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Levante HPC system
Configuration
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File Systems
Developing and Using Scientific Software
Compiling and Linking
Building your own package: spack
Running Jobs with Slurm
SLURM Introduction
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Runtime Settings
Example Batch Scripts
Slurm Binding Website
Data Processing on Levante
Data Transfer
uftp
Data Storage
HPC System Storage
HSM Stronglink (tape archive)
Getting Started with slk
Known Issues (read this!)
Archivals to tape
Retrievals from tape
File Search and Metadata
slk usage examples
Switching: pftp to slk
manual pages slk
slk: official StrongLink Command Line Interface
slk helpers: slk extension provided by DKRZ
Reference: metadata schemata
Reference: StrongLink query language
Official StrongLink Command Line Interface Guide
FAQ
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Setup on Levante using Conda
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Finding & Accessing Data
/pool/data user projects
ECMWF Reanalysis Products
Freva
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ESGF databrowser
Crawling data
Plugins
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Do you need Data?
Processing & Analysing
Publishing & Dissemination
Data Preparation and Quality Checking
ESGF publication
Publication at WDCC
Archiving & Preserving
Visualization
ParaView
ParaView on Levante
Paraview Examples
Create an image of sea surface speeds
Display clouds as a semi-transparent overlay
Create isosurfaces of ocean current speed
Create a multi-variable image / animation from a coupled ice sheet - climate simulation
Prepare a regional land and ocean map background
Streamline seeding in vector data
Volume rendering of (NARVAL II) ICON data
Isosurfaces and isocontours in regular lat-lon data
DKRZ ParaView tutorial document
The Paraview main screen
Camera and perspective
Set the background (color/gradient)
Camera: Follow Path
Camera: Orbit
Switch to camera parallel projection
Camera: Interpolate camera locations
Set the view size
Colormaps
Hack the color map:
Chose a different colormap
Invert the Colormap
Adjust the color bar and its legend
Rescale the colormap to a custom range
Save the colormap as a preset
Adjust the color map for a transparent display of clouds
Export
Composite animations using mogrify and ffmpeg
Export an animation
Saving animations and screenshots
Filters
Extrude a land surface based on topography
Apply a calculator to convert u and v into speed
Check if you have cell or point data
Use the contour filter to display isolines
Using an earth texture as background
Extrusion of topography and bathymetry
Compute isosurfaces from the point data
Add an image as texture (plane) in the background
Add an image as texture on a sphere
Use a threshold to get rid of missing missing values in ICON Ocean
NetCDF: Date and time annotation
Light
Deactivate the light kit
Readers
Load NEMO 3D data with the netCDF CF reader
The NetCDF CF reader
Load 2D ICON data with the CDI reader
Load 3D ICON Ocean data in Paraview
Pre-Processing for a multi-variable image / animation
Rendering Techniques
Use bump-mapping to composite current speed and SST
Technical
Adjust / check the camera controls
Open the Paraview settings
Activate the CDI reader plugin
Make Paraview save a state on quitting or crashing
Automating visualizations in ParaView with PvBatch
Save a state file
VAPOR
NCL
NCL examples
Python
PyNGL
GrADS
manual pages slk
¶
file version: 14 June 2022
slk: official StrongLink Command Line Interface
slk helpers: slk extension provided by DKRZ
Reference: metadata schemata
Reference: StrongLink query language
Official StrongLink Command Line Interface Guide