Documentation
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Resource allocation
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Training
Program Analysis and Tools Workshop
Training on DKRZ’s HPC systems (mistral, HPSS and cloud)
Introduction to DKRZ’s HLRE-3 system Mistral
Terms of use
Mistral HPC System
Configuration
Access and Environment
File Systems
Developing and Using Scientific Software
Compiling and Linking
Debugging
Performance Analysis
Profiling with ARM MAP
Lightweight MPI analysis
Getrusage
Intel Tools
Score-P, Vampir and Extrae
Using Python
Running Jobs with Slurm
SLURM Introduction
Partitions and Limits
MPI Runtime Settings
Example Batch Scripts
Adapting job scripts for mistral phase2
Using srun
Advanced SLURM Features
Accounting and Priorities
Job monitoring
Data Processing on Mistral
Data Transfer
uftp
GridFTP
Containers on Mistral
Manuals
Known Issues
Levante HPC system
Configuration
Access and Environment
File Systems
Developing and Using Scientific Software
Compiling and Linking
Building your own package: spack
Running Jobs with Slurm
SLURM Introduction
Partitions and Limits
MPI Runtime Settings
Example Batch Scripts
Data Processing on Levante
Data Storage
HPC System Storage
HSM Stronglink (tape archive)
Getting Started with slk
Known Issues (read this!)
Retrievals from tape
Speedup Retrievals with Striping
Metadata and File Search
Switching: pftp to slk
slk usage examples
manual pages slk
slk: official StrongLink Command Line Interface
slk helpers: slk extension provided by DKRZ
Reference: metadata schemata
Reference: StrongLink query language
External Access
FAQ
Swift Object Storage
Swiftbrowser
Python-swiftclient
Software & Services
Jupyterhub
Overview
Quick Start
Spawner options
Kernels
Lab Extensions
Changelog
Gitlab
Gitlab-runner
Redmine
Data Science Services
Machine Learning on Mistral
ModVis
Data Services
Data Management Planning
Finding & Accessing Data
/pool/data user projects
ECMWF Reanalysis Products
Freva
Databrowser
ESGF databrowser
Crawling data
Plugins
Analysis history
Result browser
Do you need Data?
Processing & Analysing
Publishing & Dissemination
Data Preparation and Quality Checking
ESGF publication
Publication at WDCC
Archiving & Preserving
Visualization
Accessing Mistral’s GPU Nodes
VNC from Windows computers without Windows Subsystem for Linux (WSL)
ParaView
DKRZ ParaView tutorial document
The Paraview main screen
Paraview Examples
Create an image of sea surface speeds
Display clouds as a semi-transparent overlay
Create a multi-variable image / animation from a coupled ice sheet - climate simulation
Prepare a regional land and ocean map background
Streamline seeding in vector data
Volume rendering of (NARVAL II) ICON data
Camera and perspective
Set the background (color/gradient)
Camera: Follow Path
Camera: Orbit
Switch to camera parallel projection
Camera: Interpolate camera locations
Set the view size
Colormaps
Hack the color map:
Chose a different colormap
Invert the Colormap
Adjust the color bar and its legend
Rescale the colormap to a custom range
Save the colormap as a preset
Adjust the color map for a transparent display of clouds
Export
Composite animations using mogrify and ffmpeg
Export an animation
Saving animations and screenshots
Filters
Extrude a land surface based on topography
Apply a calculator to convert u and v into speed
Check if you have cell or point data
Use the contour filter to display isolines
Using an earth texture as background
Extrusion of topography and bathymetry
Isosurfaces and isocontours in regular lat-lon data
Add an image as texture (plane) in the background
Add an image as texture on a sphere
NetCDF: Date and time annotation
Light
Deactivate the light kit
Readers
Load NEMO 3D data with the netCDF CF reader
Activate the CDI reader plugin
The NetCDF CF reader
Load 2D ICON data with the CDI reader
Pre-Processing for a multi-variable image / animation
Technical
Adjust / check the camera controls
Open the Paraview settings
Make Paraview save a state on quitting or crashing
Parallel Visualization with ParaView
Automating visualizations in ParaView with PvBatch
Save a state file
VAPOR
NCL
NCL examples
Python
PyNGL
GrADS
manual pages slk
¶
file version: 28 June 2021
slk: official StrongLink Command Line Interface
slk helpers: slk extension provided by DKRZ
Reference: metadata schemata
Reference: StrongLink query language